single cell trajectory inference framework based on Entropic Gaussian mixture Optimal Transport

Github Project is here: yachimura-lab/scEGOT

README:

• scEGOT
  • Installation
  • Requirements
  • Documentation
  • Preprint

Tutorials:

• Tutorial
  • Preprocess:
  • Apply GMM:
  • Animation of interpolated distribution:
  • Cell State Graph:
  • Fold Change:
  • Pathway Analysis:
  • Plot gene expression:
  • Interpolation:
  • Cell velocity:
  • Gene regulatory network:
  • Reconstruction of the Waddington Landscape:

Indices and tables

• Index

• Module Index

• Search Page