scEGOT

single cell trajectory inference framework based on Entropic Gaussian mixture Optimal Transport

Fig_scEGOT_abstract

Installation

$ pip install scegot

Requirements

Python3
GraphViz

Click here to learn how to install GraphViz (official documentation).

Documentation

The tutorial is available here.

Preprint

Please see the following paper: T. Yachimura et al. scEGOT: Single-cell trajectory inference framework based on entropic Gaussian mixture optimal transport. bioRxiv