scEGOT

single cell trajectory inference framework based on Entropic Gaussian mixture Optimal Transport

Fig_scEGOT_abstract

Installation

$ pip install scegot

Requirements

Python3
GraphViz

Click here to learn how to install GraphViz (official documentation).

Documentation

The tutorial is available here.

Paper

Please see the following paper: Yachimura, T. et al. scEGOT: single-cell trajectory inference framework based on entropic Gaussian mixture optimal transport. BMC Bioinformatics 25, 388 (2024).