Index

A

animate_gene_expression() (scegot.scEGOT method)

animatie_interpolated_distribution() (scegot.scEGOT method) apply_umap() (scegot.scEGOT method)

B

bures_wasserstein_distance() (scegot.scEGOT method)

C

calculate_cell_velocities() (scegot.scEGOT method) calculate_grns() (scegot.scEGOT method) calculate_mut_st() (scegot.scEGOT method)

calculate_normalized_solutions() (scegot.scEGOT method) calculate_solution() (scegot.scEGOT method) calculate_solutions() (scegot.scEGOT method) calculate_waddington_potential() (scegot.scEGOT method)

E

egot() (scegot.scEGOT method)

F

fit_gmm() (scegot.scEGOT method)

fit_predict_gmm() (scegot.scEGOT method)

G

gaussian_mixture_density() (scegot.scEGOT method) generate_cluster_names_with_day() (scegot.scEGOT method)

get_gaussian_map() (scegot.scEGOT method) get_gmm_means() (scegot.scEGOT method) get_positive_gmm_mean_gene_values_per_cluster() (scegot.scEGOT method)

I

is_notebook() (in module scegot)

M

make_cell_state_graph() (scegot.scEGOT method) make_interpolation_data() (scegot.scEGOT method)

module scegot

P

plot_cell_state_graph() (scegot.scEGOT method) plot_cell_velocity() (scegot.scEGOT method) plot_fold_change() (scegot.scEGOT method) plot_gene_expression_2d() (scegot.scEGOT method) plot_gene_expression_3d() (scegot.scEGOT method) plot_gmm_predictions() (scegot.scEGOT method) plot_grn_graph() (scegot.scEGOT method) plot_interpolation_of_cell_velocity() (scegot.scEGOT method) plot_pathway_gene_expressions() (scegot.scEGOT method)

plot_pathway_mean_var() (scegot.scEGOT method) plot_pathway_single_gene_2d() (scegot.scEGOT method) plot_pathway_single_gene_3d() (scegot.scEGOT method) plot_simple_cell_state_graph() (scegot.scEGOT method) plot_true_and_interpolation_distributions() (scegot.scEGOT method) plot_waddington_potential() (scegot.scEGOT method) plot_waddington_potential_surface() (scegot.scEGOT method) predict_gmm_label() (scegot.scEGOT method) predict_gmm_labels() (scegot.scEGOT method) preprocess() (scegot.scEGOT method)

R

replace_gmm_labels() (scegot.scEGOT method)

S

scegot module

scEGOT (class in scegot)